FUGUProjectProteinSequences–FastaformatBlowfish–Fugurubripes(Assemblyv3.0)=37,439sequencesJGIT.(Fugu)rubripesv4.0HomeHYPERLINK"http://genome.jgi-psf.org/Takru4/Takru4.home.html"http://genome.jgi-psf.org/Takru4/Takru4.home.htmlJGIT.(Fugu)rubripesv4.0DownloadHYPERLINK"http://genome.jgi-psf.org/Takru4/Takru4.download.ftp.html"http://genome.jgi-psf.org/Takru4/Takru4.download.ftp.htmlHYPERLINK"ftp://ftp.jgi-psf.org/pub/JGI_data/Fugu/fugu_v3_prot.fasta.Z"ftp://ftp.jgi-psf.org/pub/JGI_data/Fugu/fugu_v3_prot.fasta.ZHuman–Homosapiens(Build34.3)=27,175sequencesHYPERLINK"ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.34.3/protein/protein.fa.gz"ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.34.3/protein/protein.fa.gzMouse–Musmusculus(Build32.1)=25,371sequencesHYPERLINK"ftp://ftp.ncbi.nih.gov/genomes/M_musculus/ARCHIVE/BUILD.32.1/protein/protein.fa.gz"ftp://ftp.ncbi.nih.gov/genomes/M_musculus/ARCHIVE/BUILD.32.1/protein/protein.fa.gzLocalBlastSetupSameasrunningBlastfromNCBIwebsite,butnowlocally=>nointernettransferFormatHumanandMouseFastainDOSintodatabasestoblastagainstDatabaseFormatSetupInstructionsHYPERLINK"http://www.ncbi.nlm.nih.gov/Class/BLAST/blast_course.short.html#STAND"http://www.ncbi.nlm.nih.gov/Class/BLAST/blast_course.short.html#STANDSection–“StandaloneBLASTandtheBLASTClient”BlastprogramfilesHYPERLINK"ftp://ftp.ncbi.nih.gov/blast/"ftp://ftp.ncbi.nih.gov/blast/Pythonv2.3.5BlastFuguFastafiletoHumandatabaseBlastFuguFastafiletoMousedatabaseTargetsequencesatleast250AAinlength=>CreatenewFugufileExon/Intron(Exint)database–FASTAformatContainsinformationaboutexonsandintronsOverview-HYPERLINK"http://sege.ntu.edu.sg/wester/exint/"http://sege.ntu.edu.sg/wester/exint/Human&MouseExint(Version138)–FastaformatHYPERLINK"http://sege.ntu.edu.sg/wester/exint138/"http://sege.ntu.edu.sg/wester/exint138/MadeavailablebyMeenaKishoreSakharkar-HYPERLINK"mailto:mmeena@ntu.edu.sg"mmeena@ntu.edu.sgHumanExintFastafile=17,097